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Jean Manguy, PhD

Postdoctoral researcher in Bioinformatics interested by odd proteins, evolution, reproducible data analysis, and software development.

Shields Lab

UCD Conway Institute

Interests

  • Protein sequence analysis
  • Evolution
  • Peptidomics
  • Programming
  • Data analysis
  • Data visualization
  • Reproducibility

Education

  • PhD in Bioinformatics, 2019

    University College Dublin, Dublin, Republic Of Ireland

  • MSc in Bioinformatics, 2015

    Université de Nantes, Nantes, France

  • BSc in Biology, 2013

    Université de Nîmes, Nîmes, France

  • Advanced technician certificate in Biotechnologies, 2011

    Lycée Marie Curie, Marseille, France









Recent Posts

Last updated on 2020-11-27 6 min read software development, bioinformatics

Spideog

Introducing a new tool to convert and combine Kraken reports

Last updated on 2020-09-19 12 min read software development

I started to learn Rust

Earlier this year I set up to learn a new programming language. I started to learn Rust.

Last updated on 2020-09-19 8 min read tutorial

Subtrees as triangles with ggtree

how to draw triangles with ggtree and ggplot.

Last updated on 2020-09-19 12 min read tutorial

Introduction to ggplot2 and to ggtree

Hi everyone, That’s the first tutorial I write, I will assume you know some basis of R. I try to write more to improve my writing for my PhD and for myself as English is not my native language.









Recent Publications

Jean Manguy, Denis Shields (2019). Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles. R. Soc. open sci..

Code DOI

Izabella Krystkowiak, Jean Manguy, Norman Davey (2018). PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants. In Nucleic Acids Research.

Web server DOI

Jean Manguy, Eugene Dillon, Norman Davey, Denis Shields, Thérèse Holton (2016). Peptigram: A Web-Based Application for Peptidomics Data Visualization. In Journal of Proteome Research.

PDF Web server DOI

Peter Jehl, Jean Manguy, Denis Shields, Desmond Higgins, Norman Davey (2016). ProViz—a web-based visualization tool to investigate the functional and evolutionary features of protein sequences. In Nucleic Acids Research.

Web server DOI